DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and PAX3

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_852124.1 Gene:PAX3 / 5077 HGNCID:8617 Length:505 Species:Homo sapiens


Alignment Length:477 Identity:208/477 - (43%)
Similarity:263/477 - (55%) Gaps:79/477 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILN 73
            |:|.:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||.
Human    24 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 88

  Fly    74 RFQETGSIRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSS 137
            |:|||||||||.||||||: |.|||:|.:|||.|:..||:||||||.||::..|||:...|||||
Human    89 RYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153

  Fly   138 ISRLLRGSSGSG------------------TSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRK 184
            |||:||...|.|                  ..|||||||...|.:..|::.|:.|:||.:.||||
Human   154 ISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRK 218

  Fly   185 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQ- 248
            ||||||||:.:|::.|||.|.||.|||:||||||||...||||||||||||||||.|||....| 
Human   219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283

  Fly   249 ------------------VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAY 295
                              :|::..:.||:..|....|...|:  .:::..|..|.|..::     
Human   284 MAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPS--STVHRPQPLPPSTVHQ----- 341

  Fly   296 GGSVASMSPASSTS--------GTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSN-----ATYP 347
              |....:|.||::        |.||...|.|     .|...|..|..|.|.|.|.     .|..
Human   342 --STIPSNPDSSSAYCLPSTRHGFSSYTDSFV-----PPSGPSNPMNPTIGNGLSPQVMGLLTNH 399

  Fly   348 SAAYSMPQT-----PATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPA-SAAG---NHIS 403
            ......|||     |.|...:..:..:::.:....|..:.||...:.|:.||. |..|   :.::
Human   400 GGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVT 464

  Fly   404 GYHHQVDQKSSMMTTAPTYPYF 425
            ||.:....:|:.....|...:|
Human   465 GYQYGQYGQSAFHYLKPDIAWF 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 95/124 (77%)
homeodomain 186..243 CDD:238039 42/56 (75%)
PAX3NP_852124.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 95/124 (77%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 48/55 (87%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 26/62 (42%)
Homeobox 222..276 CDD:395001 39/53 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 10/50 (20%)
Pax7 347..391 CDD:403540 15/48 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 209 1.000 Domainoid score I2843
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm8597
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1110.780

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