DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Nobox

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001178942.1 Gene:Nobox / 502759 RGDID:1563929 Length:524 Species:Rattus norvegicus


Alignment Length:386 Identity:103/386 - (26%)
Similarity:143/386 - (37%) Gaps:111/386 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 GVIGGSKPRVATPDIESRIEE---LKQSQPGIFSWEIRAKL------------IEAGVCDKQNAP 133
            |...|.|||.|..|.|...::   |.|..|...|...||.|            |:|..|....||
  Rat    13 GQEAGDKPRTAAQDTEGPPQDPAPLVQGDPDKLSSLPRAGLGKRPLSKTSGDCIDADTCRVHTAP 77

  Fly   134 S--VSSISRLLRGSS-GSGTSHSIDGILGGGAGSVGS------EDESEDDAEPSVQLKRKQRRSR 189
            |  |.|.....:||| ....:.::...:..|.|.|.:      .|..::..|.:.|.::|   :|
  Rat    78 SPAVCSPKPQKKGSSLQEKKAETVKPSMSAGPGQVPNPLNFRERDLKKEPLEATCQFRKK---TR 139

  Fly   190 TTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRK--QLNTQQ---- 248
            |.:.:||::.|||||....|||...|.|:||..|:|..|:.|||.||||:.||  :||.::    
  Rat   140 TLYRSDQLEELERIFQEDHYPDSDKRHEIAQMVGVTPQRIMVWFQNRRAKWRKVEKLNEKEDNNG 204

  Fly   249 -VPSFAPTSTS------FGATPT---TSAAPAPNM--GMS-----LYSSQSWPSSGAYENHAAYG 296
             .|..|.:|..      .|..||   ....|..|:  |.:     |.|.|:..||    .|....
  Rat   205 PAPPRANSSQCRSAPELLGPMPTDLEPGPVPPENILDGFTEPPVLLTSDQTLTSS----QHNESA 265

  Fly   297 GSVASMSPASSTSGTSSAAHSPVQT----------QAQQ--------PGTGSEFMTSTYGVGSSN 343
            ..||...|..|.        .|::.          ||.|        ||:.|.:.....|...::
  Rat   266 ERVAVTPPLLSP--------PPIRRTNLPLPLGPFQAPQVLPPLRDVPGSDSIYKDKPCGSWGTS 322

  Fly   344 ATYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSF----------FPP 394
            .|.| ..||       :.|.:             .|..:.:.|..|||          |||
  Rat   323 ITSP-PIYS-------NLEDM-------------GPQDYQASNQLGSFQLTQAPQTPLFPP 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 23/75 (31%)
Homeodomain 186..242 CDD:459649 26/55 (47%)
NoboxNP_001178942.1 Homeodomain 136..192 CDD:459649 27/58 (47%)

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