DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and zen

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_476793.1 Gene:zen / 40828 FlyBaseID:FBgn0004053 Length:353 Species:Drosophila melanogaster


Alignment Length:247 Identity:65/247 - (26%)
Similarity:105/247 - (42%) Gaps:41/247 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 SEDESEDDAEPSVQLKR-KQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQ 230
            |.||:. .::|:...:| |.:||||.|::.|:..||..|....|.....|.|:||...|.|.:|:
  Fly    72 SSDENL-PSQPNHDSQRVKLKRSRTAFTSVQLVELENEFKSNMYLYRTRRIEIAQRLSLCERQVK 135

  Fly   231 VWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAY 295
            :||.|||.:.:|.:...:    .|.|.:..|.|....:....:...|.|....|..|........
  Fly   136 IWFQNRRMKFKKDIQGHR----EPKSNAKLAQPQAEQSAHRGIVKRLMSYSQDPREGTAAAEKRP 196

  Fly   296 GGSVASMSP-------------ASSTSGTSSAA-------HSPVQTQAQQPGTGSEFMTSTYGVG 340
            ..:||.::|             ||:.:|..|:|       |....|.|.|..|.    ||:.|..
  Fly   197 MMAVAPVNPKPDYQASQKMKTEASTNNGMCSSADLSEILEHLAQTTAAPQVSTA----TSSTGTS 257

  Fly   341 SSNATYPSAAY----------SMPQTPATSAEQ-LRSQFASAAASGSHHPST 381
            :::|:..|:.:          |:.|....:|:. .:|:.|...|:.|.|||:
  Fly   258 TNSASSSSSGHYSYNVDLVLQSIKQDLEAAAQAWSKSKSAPILATQSWHPSS 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 22/55 (40%)
zenNP_476793.1 Homeodomain 91..147 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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