DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and phox2a

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_996953.2 Gene:phox2a / 404602 ZFINID:ZDB-GENE-000223-14 Length:280 Species:Danio rerio


Alignment Length:238 Identity:77/238 - (32%)
Similarity:107/238 - (44%) Gaps:66/238 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 KRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ--- 243
            ||||||.||||::.|:..|||:||.|.|||:|||||||....||||||||||.||||:.|||   
Zfish    89 KRKQRRIRTTFTSSQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERA 153

  Fly   244 LNTQ-------QVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVAS 301
            .|::       :.||.|.:|:....:..::.:|.|:                         |.|:
Zfish   154 ANSKASSSSGGKKPSDARSSSEDDESKESTCSPTPD-------------------------STAN 193

  Fly   302 MSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAEQLRS 366
            |   ||....||.:.||.      ||..|.|..::......::.:||.....|....|..::|..
Zfish   194 M---SSPGARSSLSPSPA------PGPASTFSPASISPALKSSPWPSLGSGTPGPTHTHTQELLK 249

  Fly   367 QFASA-AASGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHHQ 408
            .:..| :.||.          |||.           :|.:|.:
Zfish   250 AWQPADSMSGP----------FAGV-----------LSSFHRK 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 37/55 (67%)
phox2aNP_996953.2 Homeodomain 93..149 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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