DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and toe

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster


Alignment Length:542 Identity:145/542 - (26%)
Similarity:206/542 - (38%) Gaps:188/542 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QGQGRVNQLGGVFINGRPLP------------NHIRRQ--IVEMAAAGVRPCVISRQLRVSHGCV 68
            ||......|||:|..|....            |.:..|  ::|::..|:|...:::.:....|.|
  Fly    96 QGAPPAAALGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAV 160

  Fly    69 SKILNRFQETGSIR-PGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNA 132
            ||:|      |::| ||:||||||:||||.:.|:||:.|:..|.||:||||.:||..|||....|
  Fly   161 SKLL------GTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATA 219

  Fly   133 PSVSSISRLLRGSS--------------------------------------------------- 146
            ||||||:|:||..:                                                   
  Fly   220 PSVSSINRILRNRAAERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLATPPGGG 284

  Fly   147 -----------GSGTSHSIDGIL---------------------GGGAG--SVGS---------- 167
                       |||:|:..||.:                     |.|.|  |.||          
  Fly   285 PAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSP 349

  Fly   168 -----------------------EDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQY 209
                                   :.||:|..:|      |.||:|||||.:|:|.||:.|.::.|
  Fly   350 DSGSRDSRSPDADANRMIDIEGEDSESQDSDQP------KFRRNRTTFSPEQLDELEKEFDKSHY 408

  Fly   210 PDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMG 274
            |.|.|||:||..|.|:|||||||||||||:.|:......:......|||...||..:...:|...
  Fly   409 PCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLVNPVVSPVSP 473

  Fly   275 MSLYSSQSWPSSGAYENHAAY--------GGSVASMSP----------ASSTSGTSSAAHSPVQT 321
            :.:....:.|.||..:....|        ..|.::..|          :|.||..||..|  ::.
  Fly   474 IPVPVPVAVPESGQQKQPYPYSTSNMCNTSSSSSNSQPCNTINPGSKMSSKTSSVSSNQH--MEE 536

  Fly   322 QAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQ---TPATSAEQLRSQFAS------------- 370
            .|....|.|...::...:|..|:.:.:...::|.   .|..||......||.             
  Fly   537 PAAAVATASPTASAPLSMGGENSAFRALPMTLPMPMTLPTASAAAFALSFARQYIAKYMGTPLNL 601

  Fly   371 -------AAASGSHHPSTWDSY 385
                   .|.||..|.|....|
  Fly   602 GHGSSPIQAQSGRDHQSEEREY 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 54/138 (39%)
homeodomain 186..243 CDD:238039 36/56 (64%)
toeNP_524041.2 HTH 134..230 CDD:304362 46/101 (46%)
Homeobox 388..440 CDD:278475 33/51 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450815
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

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