DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Poxn

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster


Alignment Length:414 Identity:125/414 - (30%)
Similarity:172/414 - (41%) Gaps:162/414 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGS 80
            |..||..||||||||:||||||:.:||:||::|..|||||.|||||.||||||||||.||.||||
  Fly     2 PHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGS 66

  Fly    81 IRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRG 144
            ||||.|||||.: ||||.:..:|..||:...|:|:||||.:|.:..|||..:.||:|||:|:||.
  Fly    67 IRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRN 131

  Fly   145 SSGSGTSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQY 209
            |.                                                               
  Fly   132 SG--------------------------------------------------------------- 133

  Fly   210 PDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMG 274
                                 :|             |.::     ||:...|....:||.|    
  Fly   134 ---------------------LW-------------TDEM-----TSSQQNAAAAAAAAAA---- 155

  Fly   275 MSLYSSQSWPSSGAYENHAAYGG-------SVASMSPASSTS----------GTSSAAHSPVQTQ 322
             :.:.:.|.||:|       |||       :||..:||::.|          ..:||...|::..
  Fly   156 -AAHQAGSGPSNG-------YGGQAPPPPVTVAPPTPAATPSIARYAKPPALMMNSAGEMPIKPA 212

  Fly   323 AQQPGTGSEFMTSTYGVGSSNATYPSA-----AYSM--------PQTPATSAEQLRSQFASAAAS 374
            .:.|        .:.|.|.|:...|:.     :||.        |.....:...:::|  :||:.
  Fly   213 PKMP--------PSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPSLLYYTQAHIQAQ--AAASG 267

  Fly   375 GSHHPSTWDSYNFAGSFFPPASAA 398
            |...|       :||.:.|.|.||
  Fly   268 GQFLP-------YAGGYLPHAMAA 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 79/124 (64%)
Homeodomain 186..242 CDD:459649 1/55 (2%)
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 81/127 (64%)

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