DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Phox2b

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001414175.1 Gene:Phox2b / 364152 RGDID:1560582 Length:314 Species:Rattus norvegicus


Alignment Length:219 Identity:74/219 - (33%)
Similarity:98/219 - (44%) Gaps:42/219 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 KRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNT 246
            ||||||.||||::.|:..|||:||.|.|||:|||||||....||||||||||.||||:.|||...
  Rat    95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERA 159

  Fly   247 QQVPSFAPTSTSFG----------------ATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAY 295
            ....:.|..:.|.|                ..|.::..|.||...:       ||.||  |....
  Rat   160 AAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPT-------PSCGA--NGGGG 215

  Fly   296 GGSVASMSPASS----------TSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAA 350
            ||...:.:|.::          ..|.::||.:.....|......:..:.:..|.|...|..|...
  Rat   216 GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPI 280

  Fly   351 YSMPQTPATSAEQLRSQFASAAAS 374
            .|:|       :.|...|||..:|
  Rat   281 TSIP-------DSLGGPFASVLSS 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 37/55 (67%)
Phox2bNP_001414175.1 Homeodomain 99..155 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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