DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Vsx2

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:373 Identity:90/373 - (24%)
Similarity:140/373 - (37%) Gaps:106/373 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 QNAPSVSSISRLLRGSSGSGT---------SHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQ 185
            |..|.:.|.      ::|:||         ...::.:.|.|.|             |:.:.|:|:
  Fly   184 QGFPQLKSF------AAGAGTCLPGSLAPKDFGMESLNGFGVG-------------PNSKKKKKK 229

  Fly   186 RR-SRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQV 249
            || |||.|::.|::.||..|....|||||.||.|:..|.|.|.|:||||.||||:.||   |::|
  Fly   230 RRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRK---TEKV 291

  Fly   250 PSFAPTSTSFG--ATPTTSAAPAPN----------------MGM--------SLYSSQSWPSSGA 288
            ...:.....:|  ......:.|.|:                :||        |:.:..:......
  Fly   292 WGGSTIMAEYGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSG 356

  Fly   289 YENHAAYGGSVAS----------------------MSPASSTSGTSSAAHSPVQTQAQQPGTGSE 331
            ..:|....||.::                      :|||.|:..||::..:|..:.:...|..|.
  Fly   357 VSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSASTSAPPTSTSGYAGAASS 421

  Fly   332 FMTSTYGVGSSN-ATYPSAAYSMPQTPATSAEQLRSQ---------FASAAASG----SHHPSTW 382
            ..|:..|..::| ::.|......|........||:.|         .|.|..:|    |:|| ..
  Fly   422 AATTPTGASTTNSSSSPHIELGSPSPQQQQHLQLQQQQQQQASLYLGAGAVVTGCAPPSYHP-LL 485

  Fly   383 DSYNFAGS-----------FFPPASAAGNHISGYHHQVDQKSSMMTTA 419
            |:.|.||:           ....|.||....:...||..|:.....||
  Fly   486 DAANAAGAGAAASSKDFHMIMNTAVAAAAAAAQQQHQQQQQQQQQATA 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 3/12 (25%)
Homeodomain 186..242 CDD:459649 30/56 (54%)
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 30/56 (54%)
OAR 556..572 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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