DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_063139880.1 Gene:Pax1 / 311505 RGDID:1588548 Length:489 Species:Rattus norvegicus


Alignment Length:425 Identity:143/425 - (33%)
Similarity:172/425 - (40%) Gaps:126/425 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIR 82
            |..|.||||||||:|||||||.||.:|||:|..|:|||.||||||||||||||||.|:.|||||.
  Rat   129 QTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 193

  Fly    83 PGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSG 147
            ||.||||||||.||::...|.:.||..||||:||||.:|:..|||||.|.||||||||:||...|
  Rat   194 PGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 258

  Fly   148 SGTSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDV 212
            |                         .|:|......||...:.....:.|         .|||  
  Rat   259 S-------------------------LAQPGPYEASKQPPPQPALPYNHI---------YQYP-- 287

  Fly   213 YTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPS-FAPTSTSFGATPTTSAAPAPNMGMS 276
                                                .|| .:||.|..|:.|     ..|.....
  Rat   288 ------------------------------------YPSPVSPTGTKMGSHP-----GVPGSAGH 311

  Fly   277 LYSSQSWPSSGAYEN-----------HAAYGGSVASMSP-----------ASSTSGTSSAAHSP- 318
            :...:||||:.:..|           .|..|...|:.||           |.|||...:....| 
  Rat   312 VSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGAAYSPKVEDWASVNRAAFSTSSAVNGLEKPA 376

  Fly   319 -------VQTQAQQPGTGSEFMTSTYGVGSSNATY--PSAAYSM--PQTPATSAEQLRSQFASAA 372
                   .|:.:.....|.......|...:.:..|  |:|.|..  |..|...|..|....|..|
  Rat   377 LEADIKYTQSASSLSAVGGFLPACAYPASNQHGVYSAPAAGYLSPGPPWPPAQAPPLAPHGAGVA 441

  Fly   373 ASGSH--------HPSTWDSYNFAGSFFPPASAAG 399
            ..|..        |||.      .|:...|.|..|
  Rat   442 VHGGELAAAMTFKHPSR------EGTDRKPPSPGG 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 86/123 (70%)
Homeodomain 186..242 CDD:459649 4/55 (7%)
Pax1XP_063139880.1 None

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