DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Otx2

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_038949211.1 Gene:Otx2 / 305858 RGDID:1305705 Length:297 Species:Rattus norvegicus


Alignment Length:248 Identity:81/248 - (32%)
Similarity:111/248 - (44%) Gaps:67/248 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 RKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQ 247
            |||||.||||:..|:|.||.:||:|:|||::.|||:|....|.|:||||||.||||:.|:|...|
  Rat    44 RKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 108

  Fly   248 Q-------------------VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHA 293
            |                   |.|.:.||..|  ||.:|.: .|.:..|......|          
  Rat   109 QNGGQNKVRPAKKKTSPAREVSSESGTSGQF--TPPSSTS-VPTIASSSAPVSIW---------- 160

  Fly   294 AYGGSVASMSPASSTSGTSSA----AHSPVQTQAQQPGTGSEFMTSTYGVGSSNATY-------- 346
                |.||:||.|....|||:    ::....|||.....|....||.:| |....:|        
  Rat   161 ----SPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFG-GMDCGSYLTPMHHQL 220

  Fly   347 --PSAAYS----------MPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNF 387
              |.|..|          :.|:||:    |.:|...|::.|.:  ||.|..::
  Rat   221 PGPGATLSPMGTNAVTSHLNQSPAS----LSTQGYGASSLGFN--STTDCLDY 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 32/55 (58%)
Otx2XP_038949211.1 Homeodomain 47..102 CDD:459649 32/54 (59%)
TF_Otx 161..242 CDD:427350 21/81 (26%)
Blue background indicates that the domain is not in the aligned region.

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