DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and pax3a

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_571352.1 Gene:pax3a / 30532 ZFINID:ZDB-GENE-980526-52 Length:509 Species:Danio rerio


Alignment Length:503 Identity:208/503 - (41%)
Similarity:260/503 - (51%) Gaps:118/503 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GGYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKIL 72
            |||..:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||
Zfish    23 GGYSLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKIL 87

  Fly    73 NRFQETGSIRPGVIGGSKPRVA-TPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVS 136
            .|:|||||||||.||||||:.: |||:|.:|||.|:..||:||||||.||::.|:||:.|.||||
Zfish    88 CRYQETGSIRPGAIGGSKPKQSTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDGICDRNNVPSVS 152

  Fly   137 SISRLLR---GSSGS------------------GTSHSIDGILGGGAGSVGSEDESEDDAEPSVQ 180
            ||||:||   |.:|.                  ...||||||||.  .|..|::.|:.|:||.:.
Zfish   153 SISRMLRCKFGGNGDEDEDDDEVEKREIEENERRAKHSIDGILGD--RSSHSDEGSDVDSEPGLP 215

  Fly   181 LKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLN 245
            ||||||||||||:.:|::.|||.|.||.|||:||||||||...||||||||||||||||.|||..
Zfish   216 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 280

  Fly   246 TQQVPSF--------------------------APTSTS-FGATPTTSAAPAPNMGMSLYSSQSW 283
            ..|:.:|                          .|:|.| ....|:|...|.|....|::.|...
Zfish   281 ANQLMAFNHLIPGGFPPSAMSSLQPYQLADSPYPPSSISQVSEQPSTVHRPQPLPPTSVHQSGLG 345

  Fly   284 PSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPS 348
            ...||.|..:||       ..:|...|.|..:...|...                 |.:|...||
Zfish   346 SGPGAQEGSSAY-------CLSSGRHGFSGYSDGYVAAP-----------------GHANPVNPS 386

  Fly   349 AAYSMPQ------TPATSAEQLRSQFASAAASGSHHPSTW------------------------D 383
            .:..:|.      .|.....|.:|.||.:..:|...|||.                        .
Zfish   387 ISNGLPSQVMGLLNPGAVPHQPQSDFALSPLTGGLEPSTGMPASCHSSQRLEALPGLPSMPALPS 451

  Fly   384 SYNFAGSFFPPASAAGNHISGYHHQVDQKSSMMTTAPT--------YP 423
            |.::..|.:.....:.:|::.|.:....:|.:.|:..|        ||
Zfish   452 SQSYCPSSYSSPGYSVDHVASYQYSQYGQSKVNTSTVTTVERLSRVYP 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 95/124 (77%)
homeodomain 186..243 CDD:238039 42/56 (75%)
pax3aNP_571352.1 PAX 34..159 CDD:128645 95/124 (77%)
Homeobox 223..276 CDD:278475 39/52 (75%)
Pax7 350..394 CDD:289156 13/67 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 208 1.000 Domainoid score I2805
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm6578
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.780

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