DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and otx1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_571325.2 Gene:otx1 / 30500 ZFINID:ZDB-GENE-980526-400 Length:323 Species:Danio rerio


Alignment Length:281 Identity:88/281 - (31%)
Similarity:127/281 - (45%) Gaps:57/281 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 VGSEDESEDDAEPSV---QLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTE 226
            :|....:.|...|||   ...|||||.||||:..|:|.||.:||:|:|||::.|||:|....|.|
Zfish    15 LGLSGAAMDLLHPSVGYPATPRKQRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPE 79

  Fly   227 ARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYEN 291
            :||||||.||||:.|:|   ||..|            :|...||.........|....|||.:..
Zfish    80 SRVQVWFKNRRAKCRQQ---QQSGS------------STKTRPAKKKSSPTRESTGSESSGQFTP 129

  Fly   292 HA-AYGGSVASMSPASSTSG-----TSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAA 350
            .| :..||.:|.|.:::.:|     ||.:..|.:.:.|..||:..                ||.:
Zfish   130 PAVSSAGSSSSSSSSTNNTGICSTSTSISTVSSIWSPAISPGSAP----------------PSVS 178

  Fly   351 YSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGNHISGY---------- 405
            ...|..|:.::...||  .|..|| |.:|..::........:|..|  |::.||.          
Zfish   179 LPEPVAPSNTSCMQRS--VSGTAS-STYPMPYNQTTGYSQGYPTPS--GSYFSGVDCGSYLAPMH 238

  Fly   406 -HHQVDQKSSMMTTA-PTYPY 424
             ||...|.|.|..:: ||:|:
Zfish   239 SHHHPHQLSPMTASSMPTHPH 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 32/55 (58%)
otx1NP_571325.2 Homeodomain 39..95 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..155 19/78 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 168..204 12/54 (22%)
TF_Otx 172..258 CDD:427350 23/106 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..277 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.

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