DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax2

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_006231505.2 Gene:Pax2 / 293992 RGDID:1305568 Length:432 Species:Rattus norvegicus


Alignment Length:456 Identity:149/456 - (32%)
Similarity:205/456 - (44%) Gaps:119/456 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNR 74
            |:...:|  |.|.||||||||:||||||:.:|::|||:|..|||||.||||||||||||||||.|
  Rat     9 PFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

  Fly    75 FQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSIS 139
            :.|||||:|||||||||:||||.:..:|.|.|:..|.:|:||||.:|:..|:||....||||||:
  Rat    72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136

  Fly   140 RLLRGS---------SGSGT---------------------------SHSIDGILG--------- 159
            |::|..         .|:||                           |:||:||||         
  Rat   137 RIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKR 201

  Fly   160 ---------------GGAG--------SVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALE 201
                           ||.|        .|........|::..|...||..|: .||:..|::||:
  Rat   202 KREEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALD 265

  Fly   202 RIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTS 266
            |:|.|..||||:...|..:|                    :|.|...:|:..|....  ...:.|
  Rat   266 RVFERPSYPDVFQASEHIKS--------------------EQGNEYSLPALTPGLDE--VKSSLS 308

  Fly   267 AAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGT--- 328
            |:..|.:|.::..:|::|              |.:....:||:......|.|...|...|.:   
  Rat   309 ASTNPELGSNVSGTQTYP--------------VVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLA 359

  Fly   329 ----GSEFMTSTYGVGSSNA-----TYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDS 384
                ||||..:.|......|     .:.:.|..||...|.....|.....:.:..|.|.....||
  Rat   360 GMVPGSEFSGNPYSHPQYTAYNEAWRFSNPALLMPPPGAPPLPLLPLPMTATSYRGDHIKLQADS 424

  Fly   385 Y 385
            :
  Rat   425 F 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 81/123 (66%)
homeodomain 186..243 CDD:238039 15/56 (27%)
Pax2XP_006231505.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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