DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and sebox

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_068077188.1 Gene:sebox / 282666 ZFINID:ZDB-GENE-021206-4 Length:333 Species:Danio rerio


Alignment Length:242 Identity:68/242 - (28%)
Similarity:97/242 - (40%) Gaps:44/242 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 SEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSN 235
            |..:.:.:..::.:::|.||.||..|:..|||.|..|.|||:..||.||..|.|.|:::||||.|
Zfish    84 SSPELDRTGHVEGQRKRKRTIFSRAQLSELERAFMITPYPDITLRERLAALTLLPESKIQVWFQN 148

  Fly   236 RRAR--LRKQLNTQQVPSFAPTSTSFGAT-PTTSAAPAPNMGMSLYSSQS---------WPSS-- 286
            ||||  ..|:|.|...........:|.|| |..:...:|....||...|.         ||.:  
Zfish   149 RRARSMKSKKLITPVSRRSPAKDCTFPATHPDLNLEQSPEANKSLRHHQQSLIRQALNPWPQNRP 213

  Fly   287 -----------GAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVG 340
                       .|..|....|.|..|..|       |.....|...|:......:.|.....|:.
Zfish   214 PISPDLPEILQWANRNSETPGDSSFSSCP-------SERIQHPFPNQSSSVWQMNCFAAHPEGLK 271

  Fly   341 S----SNATYPSAAYS--MPQTPATSAEQLRSQFASAAASGSHHPST 381
            |    |.|.|.|.:..  :|..|::..|.|:.|      :.:|:|.|
Zfish   272 SYCTTSQALYSSVSVDQMIPAHPSSLEEALQRQ------ALTHYPQT 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 30/57 (53%)
seboxXP_068077188.1 COG5576 53..199 CDD:227863 42/114 (37%)
Homeodomain 99..152 CDD:459649 28/52 (54%)
Blue background indicates that the domain is not in the aligned region.

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