DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Prop1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_705891.1 Gene:Prop1 / 266738 RGDID:628759 Length:223 Species:Rattus norvegicus


Alignment Length:148 Identity:55/148 - (37%)
Similarity:71/148 - (47%) Gaps:33/148 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ------ 243
            :||.||||:..|:..||..|.|.||||::.||.|||.|||:|||:||||.||||:.|||      
  Rat    66 RRRHRTTFNPAQLGQLESAFGRNQYPDIWVREGLAQDTGLSEARIQVWFQNRRAKQRKQERSLLQ 130

  Fly   244 ----LNTQQVPSFAPTSTSFGATPTTSAAPAP------NMGMSLYSSQSWPSSGA---------- 288
                |:......|...|:.:..|.||...|.|      |     ::..|.|.:||          
  Rat   131 PTAHLSPATFSGFLSESSPYPYTYTTPPPPVPCFPHPYN-----HALPSQPCTGASLTLPAQPED 190

  Fly   289 -YEN-HAAYGGSVASMSP 304
             |.. |..:.|.:|...|
  Rat   191 WYPTLHPTHTGHLACPPP 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 34/55 (62%)
Prop1NP_705891.1 Homeodomain 67..123 CDD:459649 34/55 (62%)
Blue background indicates that the domain is not in the aligned region.

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