DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Duxf4

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001030041.1 Gene:Duxf4 / 245263 MGIID:3645498 Length:291 Species:Mus musculus


Alignment Length:216 Identity:61/216 - (28%)
Similarity:77/216 - (35%) Gaps:34/216 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 LKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARL-RKQL 244
            ::...||..|..:..|...|.:.|.|...|...||||||..|||.|..:..|..|:|||. |:..
Mouse     1 MRSSSRRPHTGLTLSQRRILAQAFERNPRPGCATREELALETGLPEDMIHTWLKNKRARRHRRGR 65

  Fly   245 NTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWP-----SSGAYENHAAYGGSVASMSP 304
            .|.|......:..|.||    .|.|. ..|..:....|.|     |:|......:|..|....|.
Mouse    66 PTAQDQDLLASQVSGGA----PAGPV-GRGHEVAQESSLPQEEAGSTGMDTTSTSYSPSFCRESQ 125

  Fly   305 ASSTSGTSSAAHSPVQTQAQQPG-------------TGSEFMTSTYGVGSSNATYPSAAYSMPQT 356
            .|..|....|....|.|||...|             ...|.:.....:||.    |.|     :.
Mouse   126 LSQVSQPRGAGQKEVPTQAGNVGPLELLLDELQDEVQVKEHVPDPLDLGSD----PGA-----RE 181

  Fly   357 PATSAEQLRSQFASAAASGSH 377
            |..|.:.|:| ...||.||.|
Mouse   182 PEGSQDSLQS-LDEAANSGWH 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 23/56 (41%)
Duxf4NP_001030041.1 homeodomain 6..56 CDD:238039 19/49 (39%)
Blue background indicates that the domain is not in the aligned region.

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