DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Alx1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001408403.1 Gene:Alx1 / 216285 MGIID:104621 Length:377 Species:Mus musculus


Alignment Length:192 Identity:67/192 - (34%)
Similarity:97/192 - (50%) Gaps:34/192 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 DESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWF 233
            ||..|..:.:|. ..|:||.||||::.|::.||::|.:|.|||||.||:||..|.||||||||||
Mouse   117 DELGDKCDSNVS-SSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWF 180

  Fly   234 SNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPA----PNMGMSLYSSQSWPSSGAYENHAA 294
            .||||:.||:....|:..   ..:.|.||...|..|.    |.:..:|::..            |
Mouse   181 QNRRAKWRKRERYGQIQQ---AKSHFAATYDISVLPRTDSYPQIQNNLWAGN------------A 230

  Fly   295 YGGSVAS--MSPASSTSGTSSAAHSPVQTQAQQPGTG-----------SEFMTSTYGVGSSN 343
            .||||.:  |.|..::|..:..:||| :|.:...|..           :.|.|.:...|::|
Mouse   231 SGGSVVTSCMLPRDASSCMTPYSHSP-RTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATN 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 35/55 (64%)
Alx1NP_001408403.1 Homeodomain 133..189 CDD:459649 35/55 (64%)
Transactivation domain. /evidence=ECO:0000250|UniProtKB:Q63087 192..326 25/116 (22%)
OAR 302..320 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Blue background indicates that the domain is not in the aligned region.

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