DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Shox2

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_038693.1 Gene:Shox2 / 20429 MGIID:1201673 Length:331 Species:Mus musculus


Alignment Length:335 Identity:92/335 - (27%)
Similarity:137/335 - (40%) Gaps:100/335 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 ESRIEELKQS----------------QPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSG 147
            :.:::|.|::                :||         .:|.| .|.:::|:|    |...|..|
Mouse    13 DQKVKEKKEAITYREVLESGPLRGAKEPG---------CVEPG-RDDRSSPAV----RAAGGGGG 63

  Fly   148 SGTSHSIDGILGGGAG------------------SVGSEDES------------------EDDA- 175
            :|......|..|||||                  .:|:.:.|                  :||| 
Mouse    64 AGGGGGGGGGGGGGAGGGGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKDDAK 128

  Fly   176 --EPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRA 238
              |...|.|.|||||||.|:.:|::.|||:|..|.|||.:.||||:|..||:||||||||.||||
Mouse   129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRA 193

  Fly   239 RLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMS 303
            :.|||.|..........::.|.|   ...||..|:|......|.       ::|       .:::
Mouse   194 KCRKQENQLHKGVLIGAASQFEA---CRVAPYVNVGALRMPFQQ-------DSH-------CNVT 241

  Fly   304 PASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATY---PSAAYSMP-QTPATSAEQL 364
            |.|          ..||.|.|.....:......:...:::|.|   |:..:.:| .|.|..:...
Mouse   242 PLS----------FQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASA 296

  Fly   365 RSQFASAAAS 374
            .|..|:|||:
Mouse   297 ASVVAAAAAA 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 10/59 (17%)
Homeodomain 186..242 CDD:459649 34/55 (62%)
Shox2NP_038693.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20 1/6 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..140 25/127 (20%)
Homeodomain 141..197 CDD:459649 34/55 (62%)
OAR 311..327 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 313..326
Blue background indicates that the domain is not in the aligned region.

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