DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Rax

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_038861.2 Gene:Rax / 19434 MGIID:109632 Length:342 Species:Mus musculus


Alignment Length:359 Identity:98/359 - (27%)
Similarity:129/359 - (35%) Gaps:126/359 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 SVSSISRLLRGSSGSGTS--HSIDGILG---------------------------GG------AG 163
            |.|....||| |.|..||  |||:.|||                           |.      |.
Mouse    14 SFSLAGHLLR-SPGGSTSRLHSIEAILGFTKEDGILDTFPAERSSRSSKERDPRLGAQPACPKAP 77

  Fly   164 SVGSED--------------------ESEDDAEPSVQL-----------------KRKQRRSRTT 191
            :.|||.                    :.:.:|.||..|                 |:|.||:|||
Mouse    78 AGGSESSPPAAPGFVPEYEATRPCYPKEQGEARPSPGLSVGPAAGDSKLSEEEPPKKKHRRNRTT 142

  Fly   192 FSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ-------LNTQQV 249
            |:..|:..|||.|.::.|||||:|||||....|.|.||||||.||||:.|:|       :..|..
Mouse   143 FTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDS 207

  Fly   250 PSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSA 314
            |..     ||..:|.:||......|         |.||:        |...|..|.....|    
Mouse   208 PLL-----SFSRSPPSSALAPLGTG---------PGSGS--------GPPGSALPLEPWLG---- 246

  Fly   315 AHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATSA------EQLRSQFASAAA 373
              .|:      ||.|:..:.|..|.|......| |:|:.|.....||      :||....|...|
Mouse   247 --PPL------PGGGATALQSLPGFGPPGQGLP-ASYTPPPPFLNSAPLGPGLQQLGPPPAYPCA 302

  Fly   374 SGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHH 407
                 |:..|.::...::...:|.|...:....|
Mouse   303 -----PAFGDKFSLEEAYPRNSSIAALRLKAKEH 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 3/8 (38%)
Homeodomain 186..242 CDD:459649 33/55 (60%)
RaxNP_038861.2 Octapeptide motif 33..40 4/6 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..140 13/95 (14%)
Homeodomain 137..193 CDD:459649 33/55 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..295 29/121 (24%)
OAR 316..331 CDD:461067 2/14 (14%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 319..332 3/13 (23%)
Nuclear localization signal. /evidence=ECO:0000255 325..329 0/3 (0%)

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