DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and Pax7

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_006538692.1 Gene:Pax7 / 18509 MGIID:97491 Length:505 Species:Mus musculus


Alignment Length:471 Identity:210/471 - (44%)
Similarity:260/471 - (55%) Gaps:84/471 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILN 73
            |:|.:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||.
Mouse    24 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 88

  Fly    74 RFQETGSIRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPS--V 135
            |:|||||||||.||||||| |||||:|.:|||.|:..||:||||||.:|::.|.||:...||  |
Mouse    89 RYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153

  Fly   136 SSISRLLRGSSG----------------SGTSHSIDGILGGGAGSVGSEDESED-DAEPSVQLKR 183
            |||||:||...|                ....||||||||.....:   ||..| ::||.:.|||
Mouse   154 SSISRVLRIKFGKKEDDEEGDKKEEDGEKKAKHSIDGILGDKGNRL---DEGSDVESEPDLPLKR 215

  Fly   184 KQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQ 248
            |||||||||:.:|::.||:.|.||.|||:||||||||.|.||||||||||||||||.|||....|
Mouse   216 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQ 280

  Fly   249 ----------------VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGG 297
                            :|:..|........|||:.  :.:.|.:::..|..|.|..::      |
Mouse   281 LAAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTI--SQDGGSTVHRPQPLPPSTMHQ------G 337

  Fly   298 SVASMSPASSTSGTSSAAH--SPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATS 360
            .:|:.:.|:.||....|.|  |........||..|..|...     ||...|. ..|:...|:..
Mouse   338 GLAAAAAAADTSSAYGARHSFSSYSDSFMNPGAPSNHMNPV-----SNGLSPQ-VMSILSNPSAV 396

  Fly   361 AEQLRSQF------------ASAAASGSHHPST---WDSYNFAGSFFPPA-SAAG---NHISGYH 406
            ..|.::.|            :|.:||.|....:   .||...:.|:.||. |..|   :.::|| 
Mouse   397 PPQPQADFSISPLHGGLDSASSISASCSQRADSIKPGDSLPTSQSYCPPTYSTTGYSVDPVAGY- 460

  Fly   407 HQVDQKSSMMTTAPTY 422
                |.|....||..|
Mouse   461 ----QYSQYGQTAVDY 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 96/126 (76%)
homeodomain 186..243 CDD:238039 42/56 (75%)
Pax7XP_006538692.1 PAX 34..161 CDD:128645 96/126 (76%)
Homeobox 220..274 CDD:365835 39/53 (74%)
Pax7 347..385 CDD:372070 11/42 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2790
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm8828
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - LDO PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.820

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