DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax4

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_035168.1 Gene:Pax4 / 18506 MGIID:97488 Length:349 Species:Mus musculus


Alignment Length:340 Identity:132/340 - (38%)
Similarity:171/340 - (50%) Gaps:69/340 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |...||||||:|:||||||...|:|||::|..|:|||.|||.|:||:|||||||.|:..||.:.|
Mouse     5 GLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEP 69

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGS 148
            ..|||||||:|||.:.:||.:||...|.:|:|||:.:|...|:|.:..|||||||:|:||.....
Mouse    70 KCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAPSVSSINRVLRALQED 134

  Fly   149 GTSH----SIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQY 209
            .:.|    ....:|.....|..|...:.....|..     ..|:||.||..|.:|||:.|.|.||
Mouse   135 QSLHWTQLRSPAVLAPVLPSPHSNCGAPRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQY 194

  Fly   210 PDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ-------------------------LNTQQ- 248
            ||...|.:||.:|.|.|..|:||||||||:.|:|                         ::.|| 
Mouse   195 PDSVARGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWEAQLPGASQDLTVPKNSPGIISAQQS 259

  Fly   249 ---VPSFA-----PTSTSF-----GATP------TTSAA------------PAPNMGMSLYSSQS 282
               |||.|     |.|.||     |..|      |:|.|            |   :..|.|...:
Mouse   260 PGSVPSAALPVLEPLSPSFCQLCCGTAPGRCSSDTSSQAYLQPYWDCQSLLP---VASSSYVEFA 321

  Fly   283 WPSSGAYENHAAYGG 297
            ||....:..|...||
Mouse   322 WPCLTTHPVHHLIGG 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 70/123 (57%)
Homeodomain 186..242 CDD:459649 30/55 (55%)
Pax4NP_035168.1 PAX 5..129 CDD:128645 70/123 (57%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 36/55 (65%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 22/47 (47%)
Homeodomain 172..227 CDD:459649 30/54 (56%)
Transcription repression 278..349 14/62 (23%)

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