DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax3

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:453 Identity:203/453 - (44%)
Similarity:258/453 - (56%) Gaps:67/453 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILN 73
            |:|.:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||.
Mouse    24 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 88

  Fly    74 RFQETGSIRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSS 137
            |:|||||||||.||||||: |.|||:|.:|||.|:..||:||||||.||::..|||:...|||||
Mouse    89 RYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153

  Fly   138 ISRLLRGSSGSG------------------TSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRK 184
            |||:||...|.|                  ..|||||||...|.:..|::.|:.|:||.:.||||
Mouse   154 ISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRK 218

  Fly   185 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQ- 248
            ||||||||:.:|::.|||.|.||.|||:||||||||...||||||||||||||||.|||....| 
Mouse   219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283

  Fly   249 ------------------VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAY 295
                              :|::..:.||:..|....|...|:  .:::..|..|.|..:::    
Mouse   284 MAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPS--STVHRPQPLPPSTVHQS---- 342

  Fly   296 GGSVASMSPASSTSGTSSAAHS-PVQTQAQQPGTG-SEFMTSTYGVGSSN-----ATYPSAAYSM 353
              ::.|.:.:||.....|..|. ...|.:..|.:| |..|..|.|.|.|.     .|........
Mouse   343 --TIPSNADSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405

  Fly   354 PQT-----PATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPA-SAAG---NHISGYHH 407
            |||     |.|...:..:..:::.:....|....||...:..:.||. |.||   :.::||.:
Mouse   406 PQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYCPPTYSTAGYSMDPVTGYQY 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 95/124 (77%)
Homeodomain 186..242 CDD:459649 41/55 (75%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 95/124 (77%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 48/55 (87%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 26/62 (42%)
Homeodomain 220..276 CDD:459649 41/55 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 9/49 (18%)
Pax7 347..391 CDD:403540 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.

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