DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_006498974.1 Gene:Pax1 / 18503 MGIID:97485 Length:534 Species:Mus musculus


Alignment Length:410 Identity:141/410 - (34%)
Similarity:181/410 - (44%) Gaps:116/410 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIR 82
            |..|.||||||||:|||||||.||.:|||:|..|:|||.||||||||||||||||.|:.|||||.
Mouse   176 QTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 240

  Fly    83 PGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSG 147
            ||.||||||||.||::...|.:.||..||||:||||.:|:..|||||.|.||||||||:||...|
Mouse   241 PGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 305

  Fly   148 SGTSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDV 212
            |                         .|:|......||...:.....:.|         .|||  
Mouse   306 S-------------------------LAQPGPYEASKQPPPQPALPYNHI---------YQYP-- 334

  Fly   213 YTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVPS-FAPTSTSFGATPTTSAAPAPNMGMS 276
                                                .|| .:||.|..|..|     ..|.....
Mouse   335 ------------------------------------YPSPVSPTGTKMGTHP-----GVPGSAGH 358

  Fly   277 LYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGS 341
            :...:||||:.:..|..   |....|....:.:|:..||:||....               ..|.
Mouse   359 VSIPRSWPSAHSVSNIL---GIRTFMEQTGALAGSEGAAYSPKMED---------------WAGV 405

  Fly   342 SNATYP-SAAYSMPQTPATSAEQLRSQFASA-AASGSHHPS-TWDSYNFAGSFFPPASAAGNHIS 403
            :.|.:| |.|.:..:.||..|:...:|.||: :|.|...|: .:.:.|..|.:..||       :
Mouse   406 NRAAFPTSPAVNGLEKPALEADIKYTQSASSLSAVGGFLPACAYPASNQHGVYSAPA-------A 463

  Fly   404 GYHHQVDQKSSMMTTAPTYP 423
            ||          ::..|.:|
Mouse   464 GY----------LSPGPPWP 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 86/123 (70%)
Homeodomain 186..242 CDD:459649 4/55 (7%)
Pax1XP_006498974.1 PAX 177..304 CDD:238076 88/126 (70%)

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