DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and pax-3

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_496189.2 Gene:pax-3 / 185022 WormBaseID:WBGene00003939 Length:308 Species:Caenorhabditis elegans


Alignment Length:315 Identity:130/315 - (41%)
Similarity:175/315 - (55%) Gaps:37/315 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |||||||||||||||||||.|:|..|:.||..|::||.|||||:||||.|||||||:.|||||.|
 Worm    13 GQGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSISP 77

  Fly    84 GVIGGS-KPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSG 147
            |.|||| :.|:....:|..|.......|.:.:.|:|..||...:|.|.|||:|.:|.||: |:.|
 Worm    78 GQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRLI-GNKG 141

  Fly   148 SGT---------SHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERI 203
            .|.         |:|||.|||...... |:..|:|:...|.......||:||:|:.:|:|.||..
 Worm   142 VGVPKKMERKRLSYSIDSILGISIDEC-SKSSSDDEEGSSPSNDASSRRNRTSFTAEQLDVLENA 205

  Fly   204 FARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRK------QLNTQQVPSFAPTSTSFGAT 262
            |....||....||.:::.|||:|.::..||||||||.||      |.|.|          .||::
 Worm   206 FRADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKNMPMYQQYNVQ----------GFGSS 260

  Fly   263 PTT--SAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAA 315
            |.:  :..|:|.|.:..||:..       :.:..:...:...||.||.|...|::
 Worm   261 PPSYPTLLPSPMMFLPSYSTSP-------QLNPLFFQHILQSSPPSSQSSPPSSS 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 71/124 (57%)
homeodomain 186..243 CDD:238039 28/62 (45%)
pax-3NP_496189.2 PAX 13..141 CDD:238076 72/128 (56%)
HOX 187..243 CDD:197696 26/55 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

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