DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and npax-1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_495533.2 Gene:npax-1 / 184779 WormBaseID:WBGene00017664 Length:176 Species:Caenorhabditis elegans


Alignment Length:126 Identity:38/126 - (30%)
Similarity:61/126 - (48%) Gaps:30/126 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRPGVI 86
            :|..:|..:..||||....|::||.:...|.|...|:|.:.|:|.|||||::|::.|||::|   
 Worm    59 KVKAVGRSYNPGRPLCLEDRKKIVRLYEEGCRVSHIARLIGVTHSCVSKIMSRYRRTGSVQP--- 120

  Fly    87 GGSKPRVATPDIES-----RIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLL 142
               :...||.:.|:     :.::|||.|                   |:..|...||.|:|
 Worm   121 ---RSFRATENQENDNATWQQQQLKQQQ-------------------KKEKPLPFSIERIL 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 38/126 (30%)
Homeodomain 186..242 CDD:459649
npax-1NP_495533.2 HTH_ARSR 60..>122 CDD:481197 25/67 (37%)
Blue background indicates that the domain is not in the aligned region.

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