DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Otx1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_035153.1 Gene:Otx1 / 18423 MGIID:97450 Length:355 Species:Mus musculus


Alignment Length:284 Identity:93/284 - (32%)
Similarity:132/284 - (46%) Gaps:47/284 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GAGSVGSEDESEDDAEPSV---QLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQST 222
            |...:|....:.|...|||   ...|||||.||||:..|:|.||.:||:|:|||::.|||:|...
Mouse    11 GMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKI 75

  Fly   223 GLTEARVQVWFSNRRARLRKQ------LNTQQV-PSFAPTSTSFGATPTTSAAPAPNMGMSLYSS 280
            .|.|:||||||.||||:.|:|      ..|:.| ...:|...|.|:..:....| |.:..|..||
Mouse    76 NLPESRVQVWFKNRRAKCRQQQQSGNGTKTRPVKKKSSPVRESSGSESSGQFTP-PAVSSSASSS 139

  Fly   281 QSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQ-QPGTGSEFMTSTYGVGSSNA 344
            .|  :|.|..|.||...:....:|.::.|..|:...|.:.:.|. .||:...         |.:.
Mouse   140 SS--ASSASANPAAAAAAGLGGNPVAAASSLSTPTASSIWSPASISPGSAPT---------SVSV 193

  Fly   345 TYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSF---FPPASAA---GNHIS 403
            ..|.||      |:.::...||..|.||.:.:.:|.   ||...||:   :|..|::   |...|
Mouse   194 PEPLAA------PSNASCMQRSVAAGAATAAASYPM---SYGQGGSYGQGYPAPSSSYFGGVDCS 249

  Fly   404 GY------HHQVDQKSSMMTTAPT 421
            .|      ||...|.|.|   ||:
Mouse   250 SYLAPMHSHHHPHQLSPM---APS 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 32/55 (58%)
Otx1NP_035153.1 Homeodomain 39..95 CDD:459649 32/55 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..144 14/55 (25%)
TF_Otx 178..274 CDD:427350 30/114 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..306 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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