DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and vab-3

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001024570.1 Gene:vab-3 / 181251 WormBaseID:WBGene00006870 Length:455 Species:Caenorhabditis elegans


Alignment Length:465 Identity:163/465 - (35%)
Similarity:227/465 - (48%) Gaps:91/465 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |...||||||||:||||||:..|::||::|..|.|||.|||.|:||:|||||||.|:.|:|:|||
 Worm     5 GHTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESGTIRP 69

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGS 148
            ..||||||||||.|:..:||:.|:.||.||:||||.||:...:|:.:..||||||:|:||..:..
 Worm    70 RAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSINRVLRNLAAK 134

  Fly   149 GTS-----------HSIDGILGGGA----------GSVG--------------------SED--- 169
            ...           ..:|......:          |:||                    .||   
 Worm   135 KEQVTMQTELYDRIRIVDNFPYNSSWYGQWPIPMNGAVGLNPFVPAPLIEPKTEGEFEKDEDQKP 199

  Fly   170 --ESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVW 232
              |.||||...::||||.:|:||:|:..||::||:.|.||.||||:.||.|||...|.|||:|||
 Worm   200 PTEPEDDAAARMRLKRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVW 264

  Fly   233 FSNRRARLRKQ--LNTQQVPSFAPTSTSFGA-TPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAA 294
            ||||||:.|::  :..::......:|.|.|. |||..:....||...:.|..|.|:.....|.|.
 Worm   265 FSNRRAKWRREEKMRNKRSSGTMDSSLSNGTPTPTPGSVTGSNMTNPIGSPASTPNRFPSNNSAN 329

  Fly   295 YGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGV--GSSNATYPSAA------- 350
            .        |.::....:|..::.:...|..|        .::|:  |.|.|.||...       
 Worm   330 L--------PTTNFVPQTSQMYAGLSQPAMDP--------YSFGIANGFSMAPYPQVTDFQPHHM 378

  Fly   351 --------YSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGNHI--SGY 405
                    :..|:.|.......:|...:..|.|       |....:.....|.||..|.|  |..
 Worm   379 FQGRSPYDFPYPRMPTNGHGFQQSMSPATTAVG-------DIPTLSSGMSLPVSAVLNSIDPSLT 436

  Fly   406 HHQVDQKSSM 415
            |.|:.:.|.:
 Worm   437 HSQMHELSDL 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 74/123 (60%)
homeodomain 186..243 CDD:238039 34/56 (61%)
vab-3NP_001024570.1 PAX 5..129 CDD:128645 74/123 (60%)
COG5576 183..293 CDD:227863 46/109 (42%)
Homeobox 221..274 CDD:395001 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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