DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and Pax3

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_446162.1 Gene:Pax3 / 114502 RGDID:620431 Length:484 Species:Rattus norvegicus


Alignment Length:454 Identity:210/454 - (46%)
Similarity:246/454 - (54%) Gaps:111/454 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILN 73
            |:|.:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||.
  Rat    24 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 88

  Fly    74 RFQETGSIRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSS 137
            |:|||||||||.||||||: |.|||:|.:|||.|:..||:||||||.||::..|||:...|||||
  Rat    89 RYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153

  Fly   138 ISRLLRGSSGSG------------------TSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRK 184
            |||:||...|.|                  ..|||||||...|.:..|::.|:.|:||.:.||||
  Rat   154 ISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRK 218

  Fly   185 QRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQV 249
            ||||||||:.:|::.|||.|.||.|||:||||||||...||||||||||||||||.|||....|:
  Rat   219 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283

  Fly   250 PSF---APTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPAS---ST 308
            .:|   .|     |..|.|:....|                      .|..|..|..|.|   :.
  Rat   284 MAFNHLIP-----GGFPPTAMPTLP----------------------TYQLSETSYQPTSIPQAV 321

  Fly   309 SGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAA 373
            |..||..|.|      ||...|....||.   .|||. .|:||.:|.|        |..|:|   
  Rat   322 SDPSSTVHRP------QPLPPSTVHQSTI---PSNAD-SSSAYCLPST--------RHGFSS--- 365

  Fly   374 SGSHHPSTWDSYNFAGSFFPPAS-------AAGNHIS-----------GYHH--QVDQKSSMMT 417
                         :..||.||:.       |.||.:|           |..|  |.|...|.:|
  Rat   366 -------------YTDSFVPPSGPSNPMNPAIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLT 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 95/124 (77%)
homeodomain 186..243 CDD:238039 42/56 (75%)
Pax3NP_446162.1 PAX 34..159 CDD:128645 95/124 (77%)
MFAP1 164..>286 CDD:336570 64/121 (53%)
Homeobox 222..276 CDD:333795 39/53 (74%)
Pax7 347..391 CDD:289156 18/68 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2702
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm9073
orthoMCL 1 0.900 - - OOG6_105365
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.780

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