DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Rax

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_446130.1 Gene:Rax / 114213 RGDID:620371 Length:342 Species:Rattus norvegicus


Alignment Length:360 Identity:101/360 - (28%)
Similarity:131/360 - (36%) Gaps:128/360 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 SVSSISRLLRGSSGSGTS--HSIDGILGG--------------------------GAGSV----- 165
            |.|....||| |.|..||  |||:.|||.                          ||.|.     
  Rat    14 SFSLAGHLLR-SPGGSTSRLHSIEAILGFTKEDGILDTFPAERSSRGSKERDPRLGARSACPKAP 77

  Fly   166 --GSED--------------------ESEDDAEPSVQL------------------KRKQRRSRT 190
              |||.                    :.:.:|.||..|                  |:|.||:||
  Rat    78 AGGSESSPPAAPGLVPEFEATRPCYPKEQGEARPSPGLPVGPAAGDSKLSEEEEPPKKKHRRNRT 142

  Fly   191 TFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ-------LNTQQ 248
            ||:..|:..|||.|.::.|||||:|||||....|.|.||||||.||||:.|:|       :..|.
  Rat   143 TFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQD 207

  Fly   249 VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSS 313
            .|..     ||..:|.:||. ||..|         |.||:        |...|..|.....|   
  Rat   208 SPLL-----SFSRSPPSSAL-APLGG---------PGSGS--------GPPGSALPLEPWLG--- 246

  Fly   314 AAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATSA------EQLRSQFASAA 372
               .|:      ||.|:..:.|..|.|......| |:|:.|.....||      :||....|...
  Rat   247 ---PPL------PGGGATALQSLPGFGPPGQGLP-ASYTPPPPFLNSAPLGPGLQQLGPPPAYPC 301

  Fly   373 ASGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHH 407
            |     |:..|.::...::...:|.|...:....|
  Rat   302 A-----PAFGDKFSLEEAYPRNSSIAALRLKAKEH 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 3/8 (38%)
Homeodomain 186..242 CDD:459649 33/55 (60%)
RaxNP_446130.1 Octapeptide motif 33..40 4/6 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..141 14/91 (15%)
Homeodomain 138..194 CDD:459649 33/55 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 209..295 31/121 (26%)
OAR 316..331 CDD:461067 2/14 (14%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 319..332 3/13 (23%)
Nuclear localization signal. /evidence=ECO:0000255 325..329 0/3 (0%)

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