DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and sebox

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_004911692.2 Gene:sebox / 100497846 XenbaseID:XB-GENE-853158 Length:275 Species:Xenopus tropicalis


Alignment Length:89 Identity:43/89 - (48%)
Similarity:50/89 - (56%) Gaps:15/89 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GILG--GGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREEL 218
            |||.  .|||..||         ||.|.|||    ||.:|..|...||.:||...|||:.|||:|
 Frog    32 GILAKPEGAGLNGS---------PSGQRKRK----RTLYSKWQQLELESVFAIVPYPDISTREQL 83

  Fly   219 AQSTGLTEARVQVWFSNRRARLRK 242
            |:...|.|::|||||.|||||..|
 Frog    84 AKIIRLPESKVQVWFQNRRARKNK 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 28/55 (51%)
seboxXP_004911692.2 Homeodomain 51..104 CDD:459649 29/56 (52%)
Blue background indicates that the domain is not in the aligned region.

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