DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and pax7

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:XP_031761992.1 Gene:pax7 / 100496502 XenbaseID:XB-GENE-487140 Length:504 Species:Xenopus tropicalis


Alignment Length:457 Identity:213/457 - (46%)
Similarity:253/457 - (55%) Gaps:73/457 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILN 73
            |:|.:     |||||||||||||||||||||||.:|||||..|:||||||||||||||||||||.
 Frog    25 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 89

  Fly    74 RFQETGSIRPGVIGGSKPR-VATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPS--V 135
            |:|||||||||.||||||| |||||:|.:|||.|:..||:||||||.:|::.|.||:.:.||  |
 Frog    90 RYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSSVPSGLV 154

  Fly   136 SSISRLLRGSSG----------------SGTSHSIDGILGGGAGSVGSEDESED-DAEPSVQLKR 183
            |||||:||...|                ....||||||||.....:   ||..| ::||.:.|||
 Frog   155 SSISRVLRIKFGKKEEDDDCDKKEEDGEKKAKHSIDGILGDKGNRI---DEGSDVESEPDLPLKR 216

  Fly   184 KQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQ 248
            |||||||||:.:|::.||:.|.||.|||:||||||||.|.||||||||||||||||.|||....|
 Frog   217 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQ 281

  Fly   249 VPSF---APTSTSFGATPTTS--AAPAPNMGMSLYSSQSWPSSGAYENHAA---------YGGSV 299
            :.:|   .|     |..|.|.  |.|...:..|.||:.|....|....|..         .||..
 Frog   282 LAAFNHLLP-----GGFPPTGMPALPPYQLPESSYSAASLGQDGGSTVHRPQPLPPSSMHQGGLS 341

  Fly   300 ASMSPASSTSGTSSAAH--SPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTPATSAE 362
            |:.:.|.|..|   |.|  |........||..|..|...     ||...|. ..|:..:|.....
 Frog   342 AATADAGSAYG---ARHSFSSYSDSFINPGGPSNHMNPV-----SNGLSPQ-VMSILSSPGGVGH 397

  Fly   363 QLRSQFA-SAAASGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHHQVDQKS-SMMTTAPTYPYF 425
            |.:|.|: |...||....::             .||:.:..|.....||..| |....||||...
 Frog   398 QSQSDFSISPLHSGLETSNS-------------LSASCSQRSDSIKSVDSLSTSQSYCAPTYSTT 449

  Fly   426 GF 427
            |:
 Frog   450 GY 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 96/126 (76%)
homeodomain 186..243 CDD:238039 42/56 (75%)
pax7XP_031761992.1 PAX 35..162 CDD:128645 96/126 (76%)
Homeobox 221..275 CDD:395001 39/53 (74%)
Pax7 345..384 CDD:403540 12/46 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45636
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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