DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and pax10

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001373372.1 Gene:pax10 / 100192208 ZFINID:ZDB-GENE-081022-10 Length:275 Species:Danio rerio


Alignment Length:278 Identity:95/278 - (34%)
Similarity:134/278 - (48%) Gaps:49/278 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 HSIDG--------ILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQ 208
            |..||        :.|.|.|.|..|.:..||::..:|||||.:|:||:|:.:||||||:.|.||.
Zfish    33 HGTDGCVEDLNVQMAGAGEGVVQGERDEVDDSQLHLQLKRKLQRNRTSFTQEQIDALEKEFERTH 97

  Fly   209 YPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ--LNTQQVPSFAPTSTSFGATPTTSAAPAP 271
            ||||:.||.||....|.|||:|||||||||:.|::  |..|: .|.:.:|.|...||.:::..:|
Zfish    98 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR-RSGSSSSCSQTHTPLSTSFNSP 161

  Fly   272 NMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTST 336
                 :|.|....|||:..:.     |.:|:|..||.|..||....|.|:            |.|
Zfish   162 -----VYHSHHSNSSGSMHSR-----SDSSLSGYSSLSVFSSMQSLPSQS------------TPT 204

  Fly   337 YGVGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAG-N 400
            |            :..:|.:| ::...|..:|.|:..|....|....|.|  ..||...|||| .
Zfish   205 Y------------SCMLPPSP-SALPPLSRKFDSSYTSPHLPPPPTASAN--TGFFAGVSAAGQT 254

  Fly   401 HISGYHHQVDQKSSMMTT 418
            .:.|...::.|..|...|
Zfish   255 AVQGGDQELGQGLSQYWT 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 34/55 (62%)
pax10NP_001373372.1 Homeodomain 76..131 CDD:459649 34/54 (63%)
Blue background indicates that the domain is not in the aligned region.

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