DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and sia1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001090821.1 Gene:sia1 / 100038038 XenbaseID:XB-GENE-482368 Length:240 Species:Xenopus tropicalis


Alignment Length:122 Identity:35/122 - (28%)
Similarity:52/122 - (42%) Gaps:14/122 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 EDESEDDAEPSVQLKR------KQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTE 226
            |:|..:...|.||...      .:.|.||.:|.:|...|:..|....|||...|..:|:.|.:.|
 Frog   113 EEERRECKRPLVQADEAVAAPSARSRRRTIYSKEQTHFLQNQFDLNPYPDFVNRCRIAKITAIPE 177

  Fly   227 ARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSW 283
            .|:||||.|||||        .:|..|.:.:.....|..|..|..::.......::|
 Frog   178 PRIQVWFQNRRAR--------HLPRAATSLSPQERKPPGSVGPRSSLCREAQHPEAW 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 24/55 (44%)
sia1NP_001090821.1 Homeodomain 138..191 CDD:459649 24/60 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..240 6/34 (18%)
Blue background indicates that the domain is not in the aligned region.

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