DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and PHOX2B

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_003915.2 Gene:PHOX2B / 8929 HGNCID:9143 Length:314 Species:Homo sapiens


Alignment Length:234 Identity:84/234 - (35%)
Similarity:99/234 - (42%) Gaps:78/234 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ISDTESEP-------------GIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQT 218
            :.|.:|.|             |:..||||||.|||||:.||:.|||.|:.|.|||:|||||||..
Human    70 LRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALK 134

  Fly   219 TALTEARIQVWFSNRRARLRKH--------------------------------------SGGSN 245
            ..|||||:||||.||||:.||.                                      :||..
Human   135 IDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPG 199

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSS 310
            ...:|..|..:|.|.|.|.|.|.||...||.|.|.    .|..|..|           ||.|.::
Human   200 PNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGG----EPGKGGAA-----------AAAAAAA 249

  Fly   311 HHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPG 349
            ..:||.|||||      ||      .|..|.||....||
Human   250 AAAAAAAAAAA------GG------LAAAGGPGQGWAPG 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 37/55 (67%)
PHOX2BNP_003915.2 Homeodomain 99..155 CDD:459649 37/55 (67%)
polyalanine repeat 241..260 9/29 (31%)
Blue background indicates that the domain is not in the aligned region.

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