DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and HDG11

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_177479.1 Gene:HDG11 / 843671 AraportID:AT1G73360 Length:722 Species:Arabidopsis thaliana


Alignment Length:137 Identity:40/137 - (29%)
Similarity:61/137 - (44%) Gaps:22/137 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 GSDRGSEDGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQY 206
            ||..|.:.|          |....|.|:|:       ::|:|..|  .||:|::.||.:|....:
plant    11 GSGSGGDGG----------GSHHHDGSETD-------RKKKRYHR--HTAQQIQRLESSFKECPH 56

  Fly   207 PDVYTREELAQTTALTEARIQVWFSNRRARLR-KHSGGSNSGLSPMNS--GSSNVGVGVGLSGAT 268
            ||...|.:|::...|...:|:.||.|||.:|: :|....||.|...|.  ...|:.:...|..|.
plant    57 PDEKQRNQLSRELGLAPRQIKFWFQNRRTQLKAQHERADNSALKAENDKIRCENIAIREALKHAI 121

  Fly   269 APLGYGP 275
            .|...||
plant   122 CPNCGGP 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709
Homeobox 185..238 CDD:278475 18/52 (35%)
HDG11NP_177479.1 Homeobox 35..88 CDD:278475 19/54 (35%)
START_ArGLABRA2_like 231..456 CDD:176884
SRPBCC 517..>562 CDD:301327
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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