DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and HDG1

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_191674.1 Gene:HDG1 / 825287 AraportID:AT3G61150 Length:808 Species:Arabidopsis thaliana


Alignment Length:189 Identity:46/189 - (24%)
Similarity:76/189 - (40%) Gaps:33/189 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 SRLLRGSDRGSE-DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERA 200
            |.:.|.|.||.: :.|.:......:.|.|.|.||.      |||:|:|..|  .|.:|::.||..
plant    72 SNVSRKSSRGEDVESRSESDNAEAVSGDDLDTSDR------PLKKKKRYHR--HTPKQIQDLESV 128

  Fly   201 FSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLR----KHSGGSNSGLSPMNS--GSSNVG 259
            |....:||...|.:|::...|...:::.||.|||.:::    :|   .|:.|...|.  .:.|:.
plant   129 FKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERH---ENALLRQENDKLRAENMS 190

  Fly   260 VGVGLSGATAPLGYGPLGVGSMA---------------GYSPAPGTTATGAGMNDGVHH 303
            |...:.........||..:|.::               ........|....|.::|.||
plant   191 VREAMRNPMCGNCGGPAVIGEISMEEQHLRIENSRLKDELDRVCALTGKFLGRSNGSHH 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 1/3 (33%)
Homeodomain 183..239 CDD:459649 17/59 (29%)
HDG1NP_191674.1 COG5576 69..185 CDD:227863 36/123 (29%)
Homeodomain 111..166 CDD:459649 18/56 (32%)
START_ArGLABRA2_like 314..537 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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