DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb-n and phox2ba

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001139175.1 Gene:phox2ba / 795258 ZFINID:ZDB-GENE-090313-51 Length:155 Species:Danio rerio


Alignment Length:154 Identity:58/154 - (37%)
Similarity:71/154 - (46%) Gaps:52/154 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 EPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARL 237
            |.|:..:|||||.||.||:.||:||||||:.|||||:||||||.|...|||||:||||.||||:.
Zfish     4 ERGVQERRKQRRVRTIFTSAQLKALERAFAHTQYPDIYTREELVQEIQLTEARVQVWFQNRRAKF 68

  Fly   238 RKHSGGSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVH 302
            ||....::     .|..||.                                             
Zfish    69 RKQERAAS-----WNESSSK--------------------------------------------- 83

  Fly   303 HAAHAPSSHHSAATAAAAAHHHTQ 326
              .|:..||.|:.||:|.....||
Zfish    84 --THSSPSHDSSETASATDPDSTQ 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 39/55 (71%)
phox2baNP_001139175.1 Homeodomain 14..70 CDD:459649 39/55 (71%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.