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Protein Alignment gsb-n and pax2
DIOPT Version :9
Sequence 1: | NP_523862.1 |
Gene: | gsb-n / 38004 |
FlyBaseID: | FBgn0001147 |
Length: | 449 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001037888.1 |
Gene: | pax2 / 733478 |
XenbaseID: | XB-GENE-486801 |
Length: | 140 |
Species: | Xenopus tropicalis |
Alignment Length: | 140 |
Identity: | 85/140 - (60%) |
Similarity: | 106/140 - (75%) |
Gaps: | 7/140 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVS 65
|||.. ...|..|.:| |.|.||||||||:||||||:.:|.:|||:|..|||||.||||||||
Frog 1 MDMHC--KADPFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 61
Fly 66 HGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD- 129
||||||||.||.|||||:|||||||||||.:|::..:|.|.:::||::|:||||::|:.||..|
Frog 62 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126
Fly 130 --PPSTSSIS 137
.||.|||:
Frog 127 DTVPSVSSIN 136
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
gsb-n | NP_523862.1 |
PAX |
20..141 |
CDD:278709 |
79/121 (65%) |
Homeobox |
185..238 |
CDD:278475 |
|
pax2 | NP_001037888.1 |
PAX |
16..137 |
CDD:128645 |
79/121 (65%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.000 |
|
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