DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and pax5

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_571713.2 Gene:pax5 / 60636 ZFINID:ZDB-GENE-001030-2 Length:396 Species:Danio rerio


Alignment Length:409 Identity:142/409 - (34%)
Similarity:185/409 - (45%) Gaps:120/409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 84
            |.|.||||||||:||||||:.:|.:|||:|..|||||.||||||||||||||||.||.|||||||
Zfish    16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRP 80

  Fly    85 GVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTSSISRLLRG---- 142
            ||||||||||.:|::..:|.:.:::||::|:||||::|:.|...|   .||.|||:|::|.    
Zfish    81 GVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVPSVSSINRIIRTKVQQ 145

  Fly   143 ----------------------SDRGSEDGRKDYTINGILG---------------GRDSDISDT 170
                                  |...|:.....|:|:||||               .:||.:::.
Zfish   146 PPGQSGAVSAHNLASTVAVTQVSAVTSDAAGSSYSISGILGISSPADASKRKRDDPLQDSPLANG 210

  Fly   171 ESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRA 235
            .|..|....|||.|.. .||.:|||.          .|......||                   
Zfish   211 HSHSGRDFLRKQMRGE-LFTPQQLET----------SDYSAMASLA------------------- 245

  Fly   236 RLRKHSGGSNSGLSPM-NSGSSNVGVGVGLSGATAPLGYGPLGVG------SMAGYSPAPGTTAT 293
                      .||..| ||.::..|..:| |....|..| ||..|      ::.||.|....|..
Zfish   246 ----------GGLEEMKNSLANQTGAELG-STVAGPQSY-PLVSGRDLASTTLPGYPPHVPPTGQ 298

  Fly   294 GA-------GMNDGVHHAAHAPSSHHSAAT------------AAAAAHHHTQMGGYDLVQSAAQH 339
            |:       ||..|...:. :|.||...:|            ......:.:.:|.    :.||..
Zfish   299 GSYSTPSLTGMVPGGDFSG-SPYSHPQYSTYNESWRFANPSLLVFQQEYGSLLGS----ERAASS 358

  Fly   340 G-FPGGFAQPGHFGSQNYY 357
            | |||...||  .||..||
Zfish   359 GLFPGQTPQP--TGSPYYY 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 79/123 (64%)
Homeodomain 183..239 CDD:459649 9/55 (16%)
pax5NP_571713.2 None

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