DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and pax7b

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001139621.1 Gene:pax7b / 566533 ZFINID:ZDB-GENE-080917-54 Length:510 Species:Danio rerio


Alignment Length:482 Identity:208/482 - (43%)
Similarity:267/482 - (55%) Gaps:101/482 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GYPFQ-----GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILN 74
            |:|.:     |||||||||||||||||||||||.||||||..|:||||||||||||||||||||.
Zfish    24 GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILC 88

  Fly    75 RYQETGSIRPGVIGGSKPK-----VTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD----- 129
            |||||||||||.||||||:     |.:|::|.||:|.::|||.:||||||:||:|:|..|     
Zfish    89 RYQETGSIRPGAIGGSKPRQTQKQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRSTVP 153

  Fly   130 ---PPSTSSISRLLRG----------SDRGSEDGRK--DYTINGILG--GRDSDISDTESEPGIP 177
               ..|.|||||:||.          .|:..:.|.|  .::|:||||  ||..::||.||||.:|
Zfish   154 SGEASSVSSISRVLRARFGKKDDEDDCDKKDDTGEKKTKHSIDGILGDKGRMDEVSDVESEPDLP 218

  Fly   178 LKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSG 242
            ||||||||||||||||||.||:||.||.|||:||||||||.|.|||||:||||||||||.||.:|
Zfish   219 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 283

  Fly   243 GSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGY----------------------- 284
            .:.  |:..|.              ..|.|:.|.|:.::..|                       
Zfish   284 ANQ--LAAFNH--------------LLPGGFPPTGMPTLPTYQLPESSYPTTTLPQDVSGTVHRP 332

  Fly   285 SPAPGTTATGAGMND------GVHHAAHAPSSHHSAATAAAAAHHH---TQMGGYDLVQSAAQHG 340
            .|.|.:|....|::.      |:....|:.||:.....:.:|:.:|   ...|....|.|...: 
Zfish   333 QPLPPSTMHQGGLSSDSSSAYGLSSNRHSFSSYTDTFMSQSASSNHMNPVSNGLSPQVMSILSN- 396

  Fly   341 FPGGFA-QPGHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISP-----SLHLSDNYSKLEAPSNW 399
             |...| ||.|..|.:..|.     :::..:.::|....:..|     ||..|.:|    .|..:
Zfish   397 -PSAVAPQPQHEFSISPLHS-----SLEASNPISASCSQRSEPIKTADSLPSSQSY----CPPTY 451

  Fly   400 SQAAYHAAANYNAHVAQHQLNDYAAAA 426
            |..:|    :.:...|.:|.:.|...|
Zfish   452 STTSY----SVDPVTAGYQYSQYGQTA 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 93/133 (70%)
Homeobox 185..238 CDD:278475 44/52 (85%)
pax7bNP_001139621.1 PAX 34..170 CDD:238076 95/135 (70%)
Homeobox 226..279 CDD:278475 44/52 (85%)
Pax7 346..389 CDD:289156 7/42 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm6578
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4594
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.950

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