DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and gsc

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001016704.1 Gene:gsc / 549458 XenbaseID:XB-GENE-486771 Length:243 Species:Xenopus tropicalis


Alignment Length:81 Identity:39/81 - (48%)
Similarity:50/81 - (61%) Gaps:3/81 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKH---S 241
            |::||.||.||.|||||||..|..|:||||.|||:||:...|.|.:::|||.||||:.|:.   |
 Frog   146 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVEVWFKNRRAKWRRQKRSS 210

  Fly   242 GGSNSGLSPMNSGSSN 257
            ...:......|..|.|
 Frog   211 SEESENTQKWNKSSKN 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 33/55 (60%)
gscNP_001016704.1 Homeodomain 149..205 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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