DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and PAX3

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_852124.1 Gene:PAX3 / 5077 HGNCID:8617 Length:505 Species:Homo sapiens


Alignment Length:492 Identity:208/492 - (42%)
Similarity:260/492 - (52%) Gaps:114/492 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGYPFQ-----GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKIL 73
            :|:|.:     |||||||||||||||||||||||.||||||..|:||||||||||||||||||||
Human    23 SGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKIL 87

  Fly    74 NRYQETGSIRPGVIGGSKPK-VTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD---PPSTS 134
            .|||||||||||.||||||| ||:|::|.:|:|.::|||.:||||||:||:|:...|   .||.|
Human    88 CRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVS 152

  Fly   135 SISRLLR-----GSDRGSEDGRKD---------YTINGILGGRDS-----DISDTESEPGIPLKR 180
            ||||:||     |.:..::..||:         ::|:|||..|.|     :.||.:|||.:||||
Human   153 SISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217

  Fly   181 KQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSN 245
            |||||||||||||||.|||||.||.|||:||||||||...|||||:||||||||||.||.:|.:.
Human   218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

  Fly   246 SGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSM-------AGYSPAPGTTATGAGMNDGVHH 303
              |...|.              ..|.|:.|..:.::       ..|.|.            .:..
Human   283 --LMAFNH--------------LIPGGFPPTAMPTLPTYQLSETSYQPT------------SIPQ 319

  Fly   304 AAHAPSS--HHSAATAAAAAHHHTQMGGYDLVQS----AAQHGF---------PGGFAQP----- 348
            |...|||  |.......:..|..|.....|...:    :.:|||         |.|.:.|     
Human   320 AVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTI 384

  Fly   349 -------------GHFGSQNYYHQDY--SKLT--IDDFSKLTADSVSKIS-----PSLHLSDNYS 391
                         .|.|..:....||  |.||  ::..:.::|....::.     .||..|.:| 
Human   385 GNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSY- 448

  Fly   392 KLEAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAAAH 428
               .|..:|...|....     |..:|...|..:|.|
Human   449 ---CPPTYSTTGYSMDP-----VTGYQYGQYGQSAFH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 94/124 (76%)
Homeobox 185..238 CDD:278475 44/52 (85%)
PAX3NP_852124.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 94/124 (76%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 50/55 (91%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 25/47 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 27/62 (44%)
Homeobox 222..276 CDD:395001 44/53 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 10/53 (19%)
Pax7 347..391 CDD:403540 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126858at2759
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 1 1.000 - - mtm8597
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4594
SonicParanoid 1 1.000 - - X1205
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
109.910

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