DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb-n and PAX2

DIOPT Version :9

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_003981.3 Gene:PAX2 / 5076 HGNCID:8616 Length:432 Species:Homo sapiens


Alignment Length:401 Identity:150/401 - (37%)
Similarity:197/401 - (49%) Gaps:117/401 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVS 65
            |||..  ...|..|.:|  |.|.||||||||:||||||:.:|.:|||:|..|||||.||||||||
Human     1 MDMHC--KADPFSAMHP--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVS 61

  Fly    66 HGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFAD- 129
            ||||||||.||.|||||:|||||||||||.:|::..:|.|.:::||::|:||||::|:.||..| 
Human    62 HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDN 126

  Fly   130 --PPSTSSISRLLR------------GSDRG--------------------SEDGRKDYTINGIL 160
              .||.|||:|::|            |:..|                    |.|....|:|||||
Human   127 DTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGIL 191

  Fly   161 G---------GRDS-----------------------DISD-----TESEPGIPLKRKQRRSRTT 188
            |         .||.                       |:|:     .:|:.|:...||..|: .|
Human   192 GIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDSLRKHLRA-DT 255

  Fly   189 FTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNS------G 247
            ||.:|||||:|.|.|..||||:...|                     .::...|...|      |
Human   256 FTQQQLEALDRVFERPSYPDVFQASE---------------------HIKSEQGNEYSLPALTPG 299

  Fly   248 LSPMN---SGSSNVGVGVGLSGA-TAPLGYG-PLGVGSMAGYSP-APGT------TATGAGMNDG 300
            |..:.   |.|:|..:|..:||. |.|:..| .:...::.||.| .|.|      |:|.|||..|
Human   300 LDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPG 364

  Fly   301 VHHAAHAPSSH 311
            ...:.: |.||
Human   365 SEFSGN-PYSH 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 PAX 20..141 CDD:278709 80/123 (65%)
Homeobox 185..238 CDD:278475 16/52 (31%)
PAX2NP_003981.3 PAX 16..140 CDD:128645 80/123 (65%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 19..75 42/55 (76%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 94..142 20/47 (43%)
homeodomain 255..>278 CDD:412151 15/22 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..325 6/20 (30%)
Pax2_C 305..>390 CDD:403565 23/71 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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