DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and abd-A

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:102 Identity:32/102 - (31%)
Similarity:44/102 - (43%) Gaps:20/102 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 GILGGRDSDISDTESEP--------GIPLKR------------KQRRSRTTFTAEQLEALERAFS 202
            |..|...:.|:|....|        |.|.:|            .:||.|.|:|..|...||:.|.
  Fly   354 GAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRGRQTYTRFQTLELEKEFH 418

  Fly   203 RTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRK 239
            ...|.....|.|:|....|||.:|::||.|||.:|:|
  Fly   419 FNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 23/55 (42%)
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 23/55 (42%)
Abdominal-A 456..478 CDD:403567 32/102 (31%)
Blue background indicates that the domain is not in the aligned region.

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