DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Poxm

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:437 Identity:138/437 - (31%)
Similarity:178/437 - (40%) Gaps:151/437 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 86
            |.||||||||:|||||||..|::|||:|..|:|||.||||||||||||||||.||.|||||.||.
  Fly    11 GEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGA 75

  Fly    87 IGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFADP---PSTSSISRLLRGSDRGSE 148
            ||||||:||:|::...|.||::.:|.||:||||::|:.||..|.   ||.|||||:||..     
  Fly    76 IGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNK----- 135

  Fly   149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTRE 213
                    .|.||.:.:        ||..:                                   
  Fly   136 --------LGSLGHQHT--------PGTVM----------------------------------- 149

  Fly   214 ELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGV 278
                                      .||.|:.|.|..::|..|.|     :.|:..:....|| 
  Fly   150 --------------------------GSGSSSGGGSVSSNGGQNNG-----TSASNNINLSNLG- 182

  Fly   279 GSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHH---------HTQMGGYDLVQ 334
                    .||         .|.||..|  ..||.:|.|||:|||         |.....|....
  Fly   183 --------NPG---------GGPHHPHH--HHHHQSAAAAASAHHVHAHAHAHAHLYNSIYQPYS 228

  Fly   335 SAAQHGF--PGGFAQP----GHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKL 393
            :||.:..  |.|...|    |..||..:.||              ..||:..:.:.|...::|..
  Fly   229 AAAAYSMKTPCGSPSPPQGAGGQGSVPHPHQ--------------LRSVAAAAAAAHWPSSHSVS 279

  Fly   394 EAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYSHPLP 440
            :..::....|..|:......|           ...|...|..| |||
  Fly   280 DILAHHQAVALRASCQVGVGV-----------GGMGGMGSTVS-PLP 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 80/121 (66%)
Homeodomain 183..239 CDD:459649 0/55 (0%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 80/121 (66%)

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