DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and pb

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:184 Identity:41/184 - (22%)
Similarity:64/184 - (34%) Gaps:48/184 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   268 FPCP-----LEGCGCEYSSLARLTIHISNQHVDYLSPNCPHCKEEIDRVDLRQ-HVRLYCKAKQF 326
            |.||     :.|.|..:|::.:.::..:....  .||     |....:.:||| :.|...|.|  
  Fly    92 FLCPDDNGGVYGAGPAHSAIKKSSVRRAASFT--FSP-----KHSSSKTNLRQLNGREEDKEK-- 147

  Fly   327 ECTHCDKKFLS--WKALSQHLKKLDQKFHCS----------QCDKSFSSQASLKLHERTHSGERP 379
                  |:||.  .:.||....|:|.....|          |.:.||.|..:.|           
  Fly   148 ------KRFLGPISRTLSYLRSKMDLALSTSSLYPSRDDVRQWEISFESLLNNK----------- 195

  Fly   380 YVCTICNKSYKTSSLRTAHMDTHIEGKTFKCEMCGKSLQTRAC---YRNHVKRH 430
            :.|.:..:..| ......:||..:|.:.||....||...|:..   |...|..|
  Fly   196 FGCALFRQFLK-KEFSDENMDFWLECEEFKKMKDGKKSTTQKAIEIYSEFVAEH 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649
pbNP_476669.3 Homeodomain 199..255 CDD:459649 12/51 (24%)
Blue background indicates that the domain is not in the aligned region.

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