DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and CG9876

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_611756.1 Gene:CG9876 / 37668 FlyBaseID:FBgn0034821 Length:275 Species:Drosophila melanogaster


Alignment Length:208 Identity:67/208 - (32%)
Similarity:88/208 - (42%) Gaps:52/208 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 GGRDSDISDTESEP--GIPLKRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTE 223
            ||.|.....:.:.|  |....||.||:||||::.||.|||:.|.||.|||.:.|||||....|:|
  Fly    94 GGADRPAPCSGNLPAGGGHHSRKPRRNRTTFSSAQLTALEKVFERTHYPDAFVREELATKVHLSE 158

  Fly   224 ARIQVWFSNRRARLRKH--SGGSNSGLSPMNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSP 286
            ||:||||.||||:.|::  |.||.:.|.                  |||            ...|
  Fly   159 ARVQVWFQNRRAKFRRNERSVGSRTLLD------------------TAP------------QLVP 193

  Fly   287 APGTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPG-- 349
            ||        :::.:|..|:.|..|........|  :....|..:|..........|||...|  
  Fly   194 AP--------ISNNMHKYANMPHPHPQPPPPPGA--YALNFGPLELRSCQNYTNCYGGFGSSGAS 248

  Fly   350 ------HFGSQNY 356
                  .||:.||
  Fly   249 GSGVCSFFGATNY 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 34/55 (62%)
CG9876NP_611756.1 Homeodomain 118..174 CDD:459649 34/55 (62%)
Blue background indicates that the domain is not in the aligned region.

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