DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and lms

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:368 Identity:92/368 - (25%)
Similarity:139/368 - (37%) Gaps:108/368 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 ADPPSTSSISRLLRGSDRGSEDGRKDYTI-----NGILGGRDSDISDTESEPGIPLKRKQRRSRT 187
            |..|:|||.      .|...:||:.|..:     ||:  |.|                :::|.||
  Fly    51 ASSPATSSC------LDDNMDDGKSDIDLASDDGNGL--GDD----------------RKKRPRT 91

  Fly   188 TFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRAR-LRKHSGGSNSGLSPM 251
            .|:|.|::|||..|.|.:|..|..|..||:...|||.:|::||.|||.: .||::       |.:
  Fly    92 AFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYT-------SDV 149

  Fly   252 NSGSSNVGVGVGLSGATAPLGYG---------PLGV---------GSMAGYSPAPGTTATGAGM- 297
            .:.:|:....:|:.|...|:..|         |.|.         ||.:....|..|||||:.| 
  Fly   150 ETLASHYYAQLGIGGLARPMVVGDRLWLFSQTPTGPTPIQSIMLNGSGSAAPMASATTATGSPMR 214

  Fly   298 ---NDGVHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQP--GHFGSQNYY 357
               ..|.......||...||..|..|.       |..|     ....|.|.|:|  |...:.:|.
  Fly   215 PYATSGGMPPLPGPSVMESARNAILAR-------GQPL-----NFALPFGVAKPPAGGVPAASYI 267

  Fly   358 HQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLE---APSNWSQAAYHAAA-------NYNA 412
            .:          .|..|.|....:.||..:::|.:::   .|......|.:..|       :.||
  Fly   268 PR----------CKPYATSYVDYAASLPTNESYLQMKYATLPPEAESGASNGLAELERVFGDANA 322

  Fly   413 HVAQHQLNDYAAAAAHGNPASAYSHP---------LPTQGQAK 446
            :..|.:....|..      |:||.|.         .|||.:::
  Fly   323 NFLQQRSTPVAGT------ATAYGHDGLNQAQRSRRPTQSESE 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 5/12 (42%)
Homeodomain 183..239 CDD:459649 25/56 (45%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 22/78 (28%)
Homeodomain 87..143 CDD:459649 25/55 (45%)

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