DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb-n and oc

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001356934.1 Gene:oc / 31802 FlyBaseID:FBgn0004102 Length:664 Species:Drosophila melanogaster


Alignment Length:443 Identity:101/443 - (22%)
Similarity:146/443 - (32%) Gaps:187/443 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKH---- 240
            |||||.|||||..||:.||..|.:|:|||::.|||:|....|.|:|:||||.||||:.|:.    
  Fly    65 RKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQLQQQ 129

  Fly   241 ---------------------------------------------SGGSNSGLSPMNSGSSNVG- 259
                                                         |||:||..|....|:|... 
  Fly   130 QQSNSLSSSKNASGGGSGNSCSSSSANSRSNSNNNGSSSNNNTQSSGGNNSNKSSQKQGNSQSSQ 194

  Fly   260 VGVGLSGATAPLGYGPLGVGSMAGYSPAPGT---------TATGAGMNDGVHHAAH--------- 306
            .|.|.||.............|.|....|..:         :|..|..:.|.:.:|:         
  Fly   195 QGGGSSGGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNSNNNNQG 259

  Fly   307 --APSS-------------HHSAATAAA-----AAHHHTQ----------------------MGG 329
              .|:|             |.|||.|||     |||.::.                      .||
  Fly   260 NSTPNSSSSGGGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPATSVSPVSIVCKKEHLSGG 324

  Fly   330 YDLVQSAAQHGFPGGFAQPGHFG---------------SQNYYHQDYSKL--------------- 364
            |.   |:...|..||.|..|...               ||:.....|.:|               
  Fly   325 YG---SSVGGGGGGGGASSGGLNLGVGVGVGVGVGVGVSQDLLRSPYDQLKDAGGDIGAGVHHHH 386

  Fly   365 ---------------------TIDDFSKLTADS--VSKISPSLHLSDNYSKLEAPSNWSQAAYHA 406
                                 .:|..|.:|..|  ::.:||....:..::...|     |:|:|:
  Fly   387 SIYGSAAGSNPRLLQPGGNITPMDSSSSITTPSPPITPMSPQSAAAAAHAAQSA-----QSAHHS 446

  Fly   407 AANYNAHVAQHQL------------NDYAAAAAHGNPASAYSHPLPTQGQAKY 447
            ||:..|:::.|..            |:||.|.::.:....:|:    |.|..|
  Fly   447 AAHSAAYMSNHDSYNFWHNQYQQYPNNYAQAPSYYSQMEYFSN----QNQVNY 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199
Homeodomain 183..239 CDD:459649 31/55 (56%)
ocNP_001356934.1 Homeodomain 68..123 CDD:459649 31/54 (57%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.