DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb-n and Arx

DIOPT Version :10

Sequence 1:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001093644.1 Gene:Arx / 317268 RGDID:1562672 Length:566 Species:Rattus norvegicus


Alignment Length:300 Identity:100/300 - (33%)
Similarity:128/300 - (42%) Gaps:69/300 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 LLRGSDRGSEDGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSR 203
            ||...|...:||.....::          :.::||.|: |||||||.|||||:.|||.|||||.:
  Rat   300 LLHPEDAEGKDGEDSVCLS----------AGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQK 353

  Fly   204 TQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSG-- 266
            |.||||:||||||....|||||:||||.||||:.||..          .:|:.....|:...|  
  Rat   354 THYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE----------KAGAQTHPPGLPFPGPL 408

  Fly   267 -ATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHHH--TQMG 328
             ||.||       ......||.|            .||.| ..|:..:||.|||||...  ...|
  Rat   409 SATHPL-------SPYLDASPFP------------PHHPA-LDSAWTAAAAAAAAAFPSLPPPPG 453

  Fly   329 GYDLVQSAAQHGFPGGFAQPGHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKL 393
            ...|..|    |.|.|.:.  ..|:..:.|..:..   ..|.:|    .|.::|....|...:.|
  Rat   454 SASLPPS----GAPLGLST--FLGAAVFRHPAFIS---PAFGRL----FSTMAPLTSASTAAALL 505

  Fly   394 EAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAAAHGNPAS 433
            ..|:...:.|          ||...|.|.|.|||....:|
  Rat   506 RQPTPAVEGA----------VASGALADPATAAADRRASS 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 1/1 (100%)
Homeodomain 183..239 CDD:459649 39/55 (71%)
ArxNP_001093644.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..264
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..319 5/28 (18%)
Homeodomain 333..389 CDD:459649 39/55 (71%)
OAR 530..548 CDD:461067 0/5 (0%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 534..547 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.

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